Publications

2021

Hernando, R., Gamarra, B., McCall, A., Cheronet, O., Fernandes, D., Sirak, K., Schmidt, R., Lozano, M., Szeniczey, T., Hajdu, T., Bárány, A., Kalli, A., Tutkovics, E.K., Köhler, K., Kiss, K., Koós, J., Csengeri, P., Király, Á., Horváth, A., Hajdu, M.L., Tóth, K., Patay, R., Feeney, R.N.M., Pinhasi, R., 2021. Integrating buccal and occlusal dental microwear with isotope analyses for a complete paleodietary reconstruction of Holocene populations from Hungary. Sci Rep 11, 7034. https://doi.org/10.1038/s41598-021-86369-x
Cheronet, O., Ash, A., Anders, A., Dani, J., Domboróczki, L., Drozdova, E., Francken, M., Jovanovic, M., Milasinovic, L., Pap, I., Raczky, P., Teschler-Nicola, M., Tvrdý, Z., Wahl, J., Zariņa, G., Pinhasi, R., 2021. Sagittal suture morphological variation in human archaeological populations. Anat Rec (Hoboken). https://doi.org/10.1002/ar.24627
Novak, M., Olalde, I., Ringbauer, H., Rohland, N., Ahern, J., Balen, J., Janković, I., Potrebica, H., Pinhasi, R., Reich, D., 2021. Genome-wide analysis of nearly all the victims of a 6200 year old massacre. PLoS ONE 16, e0247332. https://doi.org/10.1371/journal.pone.0247332
Wang, C.-C., Yeh, H.-Y., Popov, A.N., Zhang, H.-Q., Matsumura, H., Sirak, K., Cheronet, O., Kovalev, A., Rohland, N., Kim, A.M., Mallick, S., Bernardos, R., Tumen, D., Zhao, J., Liu, Y.-C., Liu, J.-Y., Mah, M., Wang, K., Zhang, Z., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Carlson, K.S.D., Culleton, B.J., Eccles, L., Freilich, S., Keating, D., Lawson, A.M., Mandl, K., Michel, M., Oppenheimer, J., Özdoğan, K.T., Stewardson, K., Wen, S., Yan, S., Zalzala, F., Chuang, R., Huang, C.-J., Looh, H., Shiung, C.-C., Nikitin, Y.G., Tabarev, A.V., Tishkin, A.A., Lin, S., Sun, Z.-Y., Wu, X.-M., Yang, T.-L., Hu, X., Chen, L., Du, H., Bayarsaikhan, J., Mijiddorj, E., Erdenebaatar, D., Iderkhangai, T.-O., Myagmar, E., Kanzawa-Kiriyama, H., Nishino, M., Shinoda, K., Shubina, O.A., Guo, J., Cai, W., Deng, Q., Kang, L., Li, Dawei, Li, Dongna, Lin, R., Nini, Shrestha, R., Wang, L.-X., Wei, L., Xie, G., Yao, H., Zhang, M., He, G., Yang, X., Hu, R., Robbeets, M., Schiffels, S., Kennett, D.J., Jin, L., Li, H., Krause, J., Pinhasi, R., Reich, D., 2021. Genomic Insights into the Formation of Human Populations in East Asia. Nature. https://doi.org/10.1038/s41586-021-03336-2
Harney, É., Cheronet, O., Fernandes, D.M., Sirak, K., Mah, M., Bernardos, R., Adamski, N., Broomandkhoshbacht, N., Callan, K., Lawson, A.M., Oppenheimer, J., Stewardson, K., Zalzala, F., Anders, A., Candilio, F., Constantinescu, M., Coppa, A., Ciobanu, I., Dani, J., Gallina, Z., Genchi, F., Nagy, E.G., Hajdu, T., Hellebrandt, M., Horváth, A., Király, Á., Kiss, K., Kolozsi, B., Kovács, P., Köhler, K., Lucci, M., Pap, I., Popovici, S., Raczky, P., Simalcsik, A., Szeniczey, T., Vasilyev, S., Virag, C., Rohland, N., Reich, D., Pinhasi, R., 2021. A minimally destructive protocol for DNA extraction from ancient teeth. Genome Research. 31:472–483 https://doi.org/10.1101/gr.267534.120
Gelabert, P., Sawyer, S., Bergstrom, A., Collin, T.C., Meshvelian, T., Belfer-Cohen, A., Lordkipanidze, D., Jakeli, N., Matskevich, Z., Bar-Oz, G., Fernandes, D.M., Cheronet, O., Ozdogan, K.T., Oberreiter, V., Feeney, R.N.M., Skoglund, P., Pinhasi, R., 2021. Genome-scale sequencing and analysis of human, wolf and bison DNA from 25,000 year-old sediment (preprint). https://doi.org/10.1101/2021.01.08.425895

2020

Fernandes, D.M., Sirak, K.A., Ringbauer, H., Sedig, J., Rohland, N., Cheronet, O., Mah, M., Mallick, S., Olalde, I., Culleton, B.J., Adamski, N., Bernardos, R., Bravo, G., Broomandkhoshbacht, N., Callan, K., Candilio, F., Demetz, L., Carlson, K.S.D., Eccles, L., Freilich, S., George, R.J., Lawson, A.M., Mandl, K., Marzaioli, F., McCool, W.C., Oppenheimer, J., Özdogan, K.T., Schattke, C., Schmidt, R., Stewardson, K., Terrasi, F., Zalzala, F., Antúnez, C.A., Canosa, E.V., Colten, R., Cucina, A., Genchi, F., Kraan, C., La Pastina, F., Lucci, M., Maggiolo, M.V., Marcheco-Teruel, B., Maria, C.T., Martínez, C., París, I., Pateman, M., Simms, T.M., Sivoli, C.G., Vilar, M., Kennett, D.J., Keegan, W.F., Coppa, A., Lipson, M., Pinhasi, R., Reich, D., 2020. A genetic history of the pre-contact Caribbean. Nature. 590:103-110 https://doi.org/10.1038/s41586-020-03053-2
Chmielewski, T.J., Hałuszko, A., Goslar, T., Cheronet, O., Hajdu, T., Szeniczey, T., Virag, C., 2020. Increase in 14C dating accuracy of prehistoric skeletal remains by optimised bone sampling: Chronometric studies on eneolithic burials from Mikulin 9 (Poland) and Urziceni-Vada Ret (Romania). Geochronometria 47, 196–208. https://doi.org/10.2478/geochr-2020-0026
Teschler-Nicola, M., Fernandes, D., Händel, M., Einwögerer, T., Simon, U., Neugebauer-Maresch, C., Tangl, S., Heimel, P., Dobsak, T., Retzmann, A., Prohaska, T., Irrgeher, J., Kennett, D.J., Olalde, I., Reich, D., Pinhasi, R., 2020. Ancient DNA reveals monozygotic newborn twins from the Upper Palaeolithic. Commun Biol 3, 650. https://doi.org/10.1038/s42003-020-01372-8
Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A.T., Storå, J., Sjögren, K.-G., Anthony, D., Antipina, E., Amiri, S., Bar-Oz, G., Bazaliiskii, V.I., Bulatović, J., Brown, D., Carmagnini, A., Davy, T., Fedorov, S., Fiore, I., Fulton, D., Germonpré, M., Haile, J., Irving-Pease, E.K., Jamieson, A., Janssens, L., Kirillova, I., Horwitz, L.K., Kuzmanovic-Cvetković, J., Kuzmin, Y., Losey, R.J., Dizdar, D.L., Mashkour, M., Novak, M., Onar, V., Orton, D., Pasarić, M., Radivojević, M., Rajković, D., Roberts, B., Ryan, H., Sablin, M., Shidlovskiy, F., Stojanović, I., Tagliacozzo, A., Trantalidou, K., Ullén, I., Villaluenga, A., Wapnish, P., Dobney, K., Götherström, A., Linderholm, A., Dalén, L., Pinhasi, R., Larson, G., Skoglund, P., 2020. Origins and genetic legacy of prehistoric dogs. Science 370, 557. https://doi.org/10.1126/science.aba9572
Lipson, M., Spriggs, M., Valentin, F., Bedford, S., Shing, R., Zinger, W., Buckley, H., Petchey, F., Matanik, R., Cheronet, O., Rohland, D., Pinhasi, R., N., Reich, 2020. Three Phases of Ancient Migration Shaped the Ancestry of Human Populations in Vanuatu. Cell. 30:4846–4856 https://doi.org/10.1101/2020.08.19.256412

Betti, L., Beyer, R. M., Jones, E. R., Eriksson, A., Tassi, F., Siska, V., Leonardi, M., Maisano Delser, P., Bentley, L. K., Nigst, P. R., Stock, J. T., Pinhasi, R., Manica, A., 2020.  Climate shaped how Neolithic farmers and European hunter-gatherers interacted after a major slowdown from 6,100 BCE to 4,500 BCE. Nature Human Behaviour 4:1004-1010
https://www.nature.com/articles/s41562-020-0897-7

Sirak, K. A., Fernandes, D. M., Cheronet, O., Harney, E., Mah, M., Mallick, S., Rohland, N., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Lawson, A. M., Mandl, K., Oppenheimer, J., Stewardson, K., Zalzala, F., Anders, A., Bartík, J., Coppa, A., Dashtseveg, T., Évinger, S., Farkaš, Z., Hajdu, T., Bayarsaikhan, J., McIntyre, L., Moiseyev, V., Okumura, M., Pap, I., Pietrusewsky, M., Raczky, P., Sefčáková, A., Soficaru, A., Szeniczey, T., Szóke, B. M., Van Gerven, D., Vasilyev, S., Bell, L., Reich, D. & Pinhasi, R., 25 Feb 2020.  Human auditory ossicles as an alternative optimal source of ancient DNA.  Genome Research. 30(3):427-436
https://genome.cshlp.org/content/30/3/427.long

Fernandes, D. M., Mittnik, A., Olalde, I., Lazaridis, I., Cheronet, O., Rohland, N., Mallick, S., Bernardos, R., Broomandkhoshbacht, N., Carlsson, J., Culleton, B. J., Ferry, M., Gamarra, B., Lari, M., Mah, M., Michel, M., Modi, A., Novak, M., Oppenheimer, J., Sirak, K. A., Stewardson, K., Mandl, K., Schattke, C., Özdoğan, K. T., Lucci, M., Gasperetti, G., Candilio, F., Salis, G., Vai, S., Camarós, E., Calò, C., Catalano, G., Cueto, M., Forgia, V., Lozano, M., Marini, E., Micheletti, M., Miccichè, R. M., Palombo, M. R., Ramis, D., Schimmenti, V., Sureda, P., Teira, L., Teschler-Nicola, M., Kennett, D. J., Lalueza-Fox, C., Patterson, N., Sineo, L., Coppa, A., Caramelli, D., Pinhasi, R. & Reich, D., 24 Feb 2020.  The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean. Nature Ecology & Evolution. 4p. 334–345
https://www.nature.com/articles/s41559-020-1102-0

Gokhman, D., Nissim-Rafinia, M., Agranat-Tamir, L., Housman, G., García-Pérez, R., Lizano, E., Cheronet, O., Mallick, S., Nieves-Colón, M. A., Li, H., Alpaslan-Roodenberg, S., Novak, M., Gu, H., Osinski, J. M., Ferrando-Bernal, M., Gelabert, P., Lipende, I., Mjungu, D., Kondova, I., Bontrop, R., Kullmer, O., Weber, G., Shahar, T., Dvir-Ginzberg, M., Faerman, M., Quillen, E. E., Meissner, A., Lahav, Y., Kandel, L., Liebergall, M., Prada, M. E., Vidal, J. M., Gronostajski, R. M., Stone, A. C., Yakir, B., Lalueza-Fox, C., Pinhasi, R., Reich, D., Marques-Bonet, T., Meshorer, E. & Carmel, L., 2020.  Differential DNA methylation of vocal and facial anatomy genes in modern humans.  Nature Communications. 111p. 1189
https://www.nature.com/articles/s41467-020-15020-6

Agranat-Tamir, L., Waldman, S., Martin, M. A. S., Gokhman, D., Mishol, N., Eshel, T., Cheronet, O., Rohland, N., Mallick, S., Adamski, N., Lawson, A. M., Mah, M., Michel, M., Oppenheimer, J., Stewardson, K., Candilio, F., Keating, D., Gamarra, B., Tzur, S., Novak, M., Kalisher, R., Bechar, S., Eshed, V., Kennett, D. J., Faerman, M., Yahalom-Mack, N., Monge, J. M., Govrin, Y., Erel, Y., Yakir, B., Pinhasi, R., Carmi, S., Finkelstein, I., Carmel, L. & Reich, D., 2020The Genomic History of the Bronze Age Southern Levant. Cell. 1815p. 1146-1157.e11
https://www.cell.com/cell/fulltext/S0092-8674%2820%2930487-6

2019

Sirak, K., Fernandes, D., Cheronet, O., Harney, E., Mah, M., Mallick, S., Rohland, N., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Lawson, A.M., Mandl, K., Oppenheimer, J., Stewardson, K., Zalzala, F., Anders, A., Bartík, J., Coppa, A., Tumen, D., Évinger, S., Farkaš, Z., Hajdu, T., Bayarsaikhan, J., McIntyre, L., Moiseyev, V., Pap, I., Pietrusewsky, M., Raczky, P., Šefčáková, A., Soficaru, A., Szeniczey, T., Szőke, B.M.,  Tuvshinjargal, T., Van Gerven, D., Vasilyev, S., Bell, L., Reich, D. & Pinhasi R. 2019.  Human Auditory Ossicles as an Alternative Optimal Source of Ancient DNA. BioRXiv  doi: https://doi.org/10.1101/654749
https://www.biorxiv.org/content/10.1101/654749v1

Pinhasi, R., Fernandes, D. M., Sirak, K. & Cheronet. 2019. Isolating the human cochlea to generate bone powder for ancient DNA analysis. Nature Protocols 14, 1194–1205
https://www.nature.com/articles/s41596-019-0137-7

Gaudio, D., Fernandes, D. M., Schmidt, R., Cheronet, O., Mazzarelli, D., Mattia, M., O’Keeffe, T., Feeney, R. N. M., Cattaneo, C. & Pinhasi, R. 2019. Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases. Scientific Reports 9, 8226.
https://www.nature.com/articles/s41598-019-44638-w

Antonio, M. L., Gao, Z., Moots, H. M., Lucci, M., Candilio, F., Sawyer, S., Oberreiter, V., Calderon, D., Devitofranceschi, K., Aikens, R. C., Aneli, S., Bartoli, F., Bedini, A., Cheronet, O., Cotter, D. J., Fernandes, D. M., Gasperetti, G., Grifoni, R., Guidi, A., La Pastina, F., Loreti, E., Manacorda, D., Matullo, G., Morretta, S., Nava, A., Fiocchi Nicolai, V., Nomi, F., Pavolini, C., Pentiricci, M., Pergola, P., Piranomonte, M., Schmidt, R., Spinola, G., Sperduti, A., Rubini, M., Bondioli, L., Coppa, A., Pinhasi, R. & Pritchard, J. K. 2019. Ancient Rome: A genetic crossroads of Europe and the Mediterranean. Science, 366, 708-714.
https://science.sciencemag.org/content/366/6466/708

Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., Alex, N., Broomandkhoshbacht, N., Candilio, F., Callan, K., Cheronet, O., Culleton, B. J., Ferry, M., Fernandes, D., Freilich, S., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, É., Harper, T. K., Keating, D., Lawson, A. M., Mah, M., Mandl, K., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zalzala, F., Zhang, Z., Akhatov, G., Bagashev, A. N., Bagnera, A., Baitanayev, B., Bendezu-Sarmiento, J., Bissembaev, A. A., Bonora, G. L., Chargynov, T. T., Chikisheva, T., Dashkovskiy, P. K., Derevianko, A., Dobeš, M., Douka, K., Dubova, N., Duisengali, M. N., Enshin, D., Epimakhov, A., Fribus, A. V., Fuller, D., Goryachev, A., Gromov, A., Grushin, S. P., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Krygin, A. P., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Mamedov, A. M., Mamirov, T. B., Meiklejohn, C., Merrett, D. C., Micheli, R., Mochalov, O., Mustafokulov, S., Nayak, A., Pettener, D., Potts, R., Razhev, D., Rykun, M., Sarno, S., Savenkova, T. M., Sikhymbaeva, K., Slepchenko, S. M., Soltobaev, O. A., Stepanova, N., Svyatko, S., Tabaldiev, K., Teschler-Nicola, M., Tishkin, A. A., Tkachev, V. V., Vasilyev, S., Velemínský, P., Voyakin, D., Yermolayeva, A., Zahir, M., Zubkov, V. S., Zubova, A., Shinde, V. S., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D. J., Frachetti, M., Pinhasi, R. & Reich. 2019. The formation of human populations in South and Central Asia. Science. 365, eaat7487 
https://science.sciencemag.org/content/365/6457/eaat7487  

Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geörg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R-M., Arbuckle, B., Bӑlӑşescu, A., Barnett, R., Bartosiewicz, L., Baryshnikov, G., Bonsall, C., Borić, D., Boroneanţ, A., Bulatović, J., Çakirlar, C., Carretero, J-M., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitraşcu, V., du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Özdoğan, A., Ervynck, A., Fulgione, D., Gligor, M., Götherström, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H-J., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanović, D., Ricaut, F-X., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasić, N., Trantalidou, K., Tresset, A., Valdiosera, C., van den Hurk, Y., Van Poucke, S., Vigne, J-D., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M. T. P., Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G. 2019. Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proceedings of the National Academy of Sciences of the United States of America. 11635p. 17231-17238.

https://www.pnas.org/content/116/35/17231

 

Flegontov, P., Altınışık, N. E., Changmai, P., Rohland, N., Mallick, S., Adamski, N., Bolnick, D. A., Broomandkhoshbacht, N., Candilio, F., Culleton, B. J., Flegontova, O., Friesen, T. M., Jeong, C., Harper, T. K., Keating, D., Kennett, D. J., Kim, A. M., Lamnidis, T. C., Lawson, A. M., Olalde, I., Oppenheimer, J., Potter, B. A., Raff, J., Sattler, R. A., Skoglund, P., Stewardson, K., Vajda, E. J., Vasilyev, S., Veselovskaya, E., Hayes, M. G., O’Rourke, D. H., Krause, J., Pinhasi, R., Reich, D. & Schiffels, S. 2019. Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America. Nature. 570p. 236–240

https://www.nature.com/articles/s41586-019-1251-y

Olalde, I., Mallick, S., Patterson, N., Rohland, N., Villalba-Mouco, V., Silva, M., Dulias, K., Edwards, C. J., Gandini, F., Pala, M., Soares, P., Ferrando-Bernal, M., Adamski, N., Broomandkhoshbacht, N., Cheronet, O., Culleton, B. J., Fernandes, D., Lawson, A. M., Mah, M., Oppenheimer, J., Stewardson, K., Zhang, Z., Jiménez Arenas, J. M., Toro Moyano, I. J., Salazar-García, D. C., Castanyer, P., Santos, M., Tremoleda, J., Lozano, M., García Borja, P., Fernández-Eraso, J., Mujika-Alustiza, J. A., Barroso, C., Bermúdez, F. J., Viguera Mínguez, E., Burch, J., Coromina, N., Vivó, D., Cebrià, A., Fullola, J. M., García-Puchol, O., Morales, J. I., Oms, F. X., Majó, T., Vergès, J. M., Díaz-Carvajal, A., Ollich-Castanyer, I., López-Cachero, F. J., Silva, A. M., Alonso-Fernández, C., Delibes de Castro, G., Jiménez Echevarría, J., Moreno-Márquez, A., Pascual Berlanga, G., Ramos-García, P., Ramos-Muñoz, J., Vijande Vila, E., Aguilella Arzo, G., Esparza Arroyo, Á., Lillios, K. T., Mack, J., Velasco-Vázquez, J., Waterman, A., Benítez de Lugo Enrich, L., Benito Sánchez, M., Agustí, B., Codina, F., de Prado, G., Estalrrich, A., Fernández Flores, Á., Finlayson, C., Finlayson, G., Finlayson, S., Giles-Guzmán, F., Rosas, A., Barciela González, V., García Atiénzar, G., Hernández Pérez, M. S., Llanos, A., Carrión Marco, Y., Collado Beneyto, I., López-Serrano, D., Sanz Tormo, M., Valera, A. C., Blasco, C., Liesau, C., Ríos, P., Daura, J., de Pedro Michó, M. J., Diez-Castillo, A. A., Flores Fernández, R., Francès Farré, J., Garrido-Pena, R., Gonçalves, V. S., Guerra-Doce, E., Herrero-Corral, A. M., Juan-Cabanilles, J., López-Reyes, D., McClure, S. B., Merino Pérez, M., Oliver Foix, A., Sanz Borràs, M., Sousa, A. C., Vidal Encinas, J. M., Kennett, D. J., Richards, M. B., Werner Alt, K., Haak, W., Pinhasi, R., Lalueza-Fox, C. & Reich, D. 2019. The genomic history of the Iberian Peninsula over the past 8000 years. Science 363, 1230-1234.
https://science.sciencemag.org/content/363/6432/1230

Stahlschmidt, M. C., Collin, T. C., Fernandes, D., Bar-Oz, G., Belfer-Cohen, A., Gao, Z., Jakeli, N., Matskevich, Z., Meshveliani, T., Pritschard, J. K., McDermott, F. & Pinhasi, R, 2019. Ancient Mammalian and Plant DNA from Late Quaternary Stalagmite Layers at Solkota Cave, Georgia. Scientific Reports. 9, 6628.
https://www.nature.com/articles/s41598-019-43147-0

Wang, C-C., Reinhold, S., Kalmykov, A., Wissgott, A., Brandt, G., Jeong, C., Cheronet, O., Ferry, M., Harney, E., Keating, D., Mallick, S., Rohland, N., Stewardson, K., Kantorovich, A. R., Maslov, V. E., Petrenko, V. G., Erlikh, V. R., Atabiev, B. C., Magomedov, R. G., Kohl, P. L., Alt, K. W., Pichler, S. L., Gerling, C., Meller, H., Vardanyan, B., Yeganyan, L., Rezepkin, A. D., Mariaschk, D., Berezina, N., Gresky, J., Fuchs, K., Knipper, C., Schiffels, S., Balanovska, E., Balanovsky, O., Mathieson, I., Higham, T., Berezin, Y. B., Buzhilova, A., Trifonov, V., Pinhasi, R., Belinskij, A. B., Reich, D., Hansen, S., Krause, J. & Haak, W., 4 Feb 2019. Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions. Nature Communications. 10, 590.
https://www.nature.com/articles/s41467-018-08220-8

Fernandes, D., Sirak, K., Cheronet, O., Howcroft, R., Čavka, M., Los, D., Burmaz, J., Pinhasi, R. & Novak, M. 2019. Cranial deformation and genetic diversity in three adolescent male individuals from the Great Migration Period from Osijek, eastern Croatia. PLoS ONE. 14, 8, e0216366.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0216366

Spriggs, M., Valentin, F., Bedford, S., Pinhasi, R., Skoglund, P., Reich, D. & Lipson, M., 2019. Revisiting ancient DNA insights into the human history of the Pacific Islands. Archaeology in Oceania. 54, p. 53-56 54

https://onlinelibrary.wiley.com/doi/abs/10.1002/arco.5180

Galland, M., D’Amore, G., Friess, M., Micciché, R., Pinhasi, R., Sparacello, V. S. & Sineo, L., 2019. Morphological variability of Upper Paleolithic and Mesolithic skulls from Sicily. Journal of Anthropological Sciences. 97p. 151-172

http://www.isita-org.com/jass/Contents/2019vol97/Galland/31909734.pdf

Bar-Oz, G., Marom, N. & Pinhasi R. 2019. Technical Note: Taxonomic identification
of petrosal bone morphology
. Bioarchaeology of the Near East 13:15–2

http://www.anthropology.uw.edu.pl/13/bne-13-02.pdf

2018

O’Sullivan, N., Posth, C., Coia, V., Schuenemann, V. J., Price, T. D., Wahl, J., Pinhasi, R., Zink, A., Krause, J. & Maixner, F. 2018. Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard. Science Advances 4, 9, eaao1262.
https://advances.sciencemag.org/content/4/9/eaao1262

Lipson, M., Cheronet, O., Mallick, S., Rohland, N., Oxenham, M., Pietrusewsky, M., Pryce, T. O., Willis, A., Matsumura, H., Buckley, H., Domett, K., Nguyen, G. H., Trinh, H. H., Kyaw, A. A., Win, T. T., Pradier, B., Broomandkhoshbacht, N., Candilio, F., Changmai, P., Fernandes, D., Ferry, M., Gamarra, B., Harney, E., Kampuansai, J., Kutanan, W., Michel, M., Novak, M., Oppenheimer, J., Sirak, K., Stewardson, K., Zhang, Z., Flegontov, P., Pinhasi, R. & Reich, D. 2018. Ancient genomes document multiple waves of migration in Southeast Asian prehistory. Science 361,92-95.
https://science.sciencemag.org/content/361/6397/92

Olalde, I., Brace, S., Allentoft, M. E., Armit, I., Kristiansen, K., Booth, T., Rohland, N., Mallick, S., Szécsényi-Nagy, A., Mittnik, A., Altena, E., Lipson, M., Lazaridis, I., Harper, T. K., Patterson, N., Broomandkhoshbacht, N., Diekmann, Y., Faltyskova, Z., Fernandes, D., Ferry, M., Harney, E., de Knijff, P., Michel, M., Oppenheimer, J., Stewardson, K., Barclay, A., Alt, K. W., Liesau, C., Ríos, P., Blasco, C., Miguel, J. V., García, R. M., Fernández, A. A., Bánffy, E., Bernabò-Brea, M., Billoin, D., Bonsall, C., Bonsall, L., Allen, T., Büster, L., Carver, S., Navarro, L. C., Craig, O. E., Cook, G. T., Cunliffe, B., Denaire, A., Dinwiddy, K. E., Dodwell, N., Ernée, M., Evans, C., Kuchařík, M., Farré, J. F., Fowler, C., Gazenbeek, M., Pena, R. G., Haber-Uriarte, M., Haduch, E., Hey, G., Jowett, N., Knowles, T., Massy, K., Pfrengle, S., Lefranc, P., Lemercier, O., Lefebvre, A., Martínez, C. H., Olmo, V. G., Ramírez, A. B., Maurandi, J. L., Majó, T., McKinley, J. I., McSweeney, K., Mende, B. G., Mod, A., Kulcsár, G., Kiss, V., Czene, A., Patay, R., Endrődi, A., Köhler, K., Hajdu, T., Szeniczey, T., Dani, J., Bernert, Z., Hoole, M., Cheronet, O., Keating, D., Velemínský, P., Dobeš, M., Candilio, F., Brown, F., Fernández, R. F., Herrero-Corral, A-M., Tusa, S., Carnieri, E., Lentini, L., Valenti, A., Zanini, A., Waddington, C., Delibes, G., Guerra-Doce, E., Neil, B., Brittain, M., Luke, M., Mortimer, R., Desideri, J., Besse, M., Brücken, G., Furmanek, M., Hałuszko, A., Mackiewicz, M., Rapiński, A., Leach, S., Soriano, I., Lillios, K. T., Cardoso, J. L., Pearson, M. P., Włodarczak, P., Price, T. D., Prieto, P., Rey, P-J., Risch, R., Rojo Guerra, M. A., Schmitt, A., Serralongue, J., Silva, A. M., Smrčka, V., Vergnaud, L., Zilhão, J., Caramelli, D., Higham, T., Thomas, M. G., Kennett, D. J., Fokkens, H., Heyd, V., Sheridan, A., Sjögren, K-G., Stockhammer, P. W., Krause, J., Pinhasi, R., Haak, W., Barnes, I., Lalueza-Fox, C. & Reich, D. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature 555, 190–196.
https://www.nature.com/articles/nature25738

Mathieson, I., Alpaslan-Roodenberg, S., Posth, C., Szécsényi-Nagy, A., Rohland, N., Mallick, S., Olalde, I., Broomandkhoshbacht, N., Candilio, F., Cheronet, O., Fernandes, D., Ferry, M., Gamarra, B., Fortes, G. G., Haak, W., Harney, E., Jones, E., Keating, D., Krause-Kyora, B., Kucukkalipci, I., Michel, M., Mittnik, A., Nägele, K., Novak, M., Oppenheimer, J., Patterson, N., Pfrengle, S., Sirak, K., Stewardson, K., Vai, S., Alexandrov, S., Alt, K. W., Andreescu, R., Antonović, D., Ash, A., Atanassova, N., Bacvarov, K., Gusztáv, M. B., Bocherens, H., Bolus, M., Boroneanţ, A., Boyadzhiev, Y., Budnik, A., Burmaz, J., Chohadzhiev, S., Conard, N. J., Cottiaux, R., Čuka, M., Cupillard, C., Drucker, D. G., Elenski, N., Francken, M., Galabova, B., Ganetsovski, G., Gély, B., Hajdu, T., Handzhyiska, V., Harvati, K., Higham, T., Iliev, S., Janković, I., Karavanić, I., Kennett, D. J., Komšo, D., Kozak, A., Labuda, D., Lari, M., Lazar, C., Leppek, M., Leshtakov, K., Vetro, D. L., Los, D., Lozanov, I., Malina, M., Martini, F., McSweeney, K., Meller, H., Menđušić, M., Mirea, P., Moiseyev, V., Petrova, V., Price, T. D., Simalcsik, A., Sineo, L., Šlaus, M., Slavchev, V., Stanev, P., Starović, A., Szeniczey, T., Talamo, S., Teschler-Nicola, M., Thevenet, C., Valchev, I., Valentin, F., Vasilyev, S., Veljanovska, F., Venelinova, S., Veselovskaya, E., Viola, B., Virag, C., Zaninović, J., Zäuner, S., Stockhammer, P. W., Catalano, G., Krauß, R., Caramelli, D., Zariņa, G., Gaydarska, B., Lillie, M., Nikitin, A. G., Potekhina, I., Papathanasiou, A., Borić, D., Bonsall, C., Krause, J., Pinhasi, R. & Reich, D. 2018. The genomic history of southeastern Europe. Nature 555, 197–203.

Lipson, M., Skoglund, P., Spriggs, M., Valentin, F., Bedford, S., Shing, R., Buckley, H., Phillip, I., Ward, G. K., Mallick, S., Rohland, N., Broomandkhoshbacht, N., Cheronet, O., Ferry, M., Harper, T. K., Michel, M., Oppenheimer, J., Sirak, K., Stewardson, K., Auckland, K., Hill, A. V. S., Maitland, K., Oppenheimer, S. J., Parks, T., Robson, K., Williams, T. N., Kennett, D. J., Mentzer, A. J., Pinhasi, R. & Reich, D. 2018. Population Turnover in Remote Oceania Shortly after Initial Settlement. Current Biology 28, 1157–1165.
https://www.nature.com/articles/nature25778  

Gamarra, B., Howcroft, R., McCall, A., Dani, J., Hajdú, Z., Nagy, E. G., Szabó, L. D., Domboróczki, L., Pap, I., Raczky, P., Marcsik, A., Zoffmann, Z. K., Hajdu, T., Feeney, R. N. M. & Pinhasi, R. 2018. 5000 years of dietary variations of prehistoric farmers in the Great Hungarian Plain. PLoS ONE. 13, e0197214.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0197214

Fernandes, D. M., Strapagiel, D., Borówka, P., Marciniak, B., Żądzińska, E., Sirak, K., Siska, V., Grygiel, R., Carlsson, J., Manica, A., Lorkiewicz, W. & Pinhasi, R. 2018. A genomic Neolithic time transect of hunter-farmer admixture in central Poland. Scientific Reports. 8, 1, 14879.
https://www.nature.com/articles/s41598-018-33067-w  

2017

Fernandes, D., Sirak, K., Novak, M., Finarelli, J. A., Byrne, J., Connolly, E., Carlsson, J. E. L., Ferretti, E., Pinhasi, R. & Carlsson, J. 2017. The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes. Scientific Reports. 7, 41529.
https://www.nature.com/articles/srep41529

Sirak, K., Fernandes, D., Cheronet, O., Novak, M., Gamarra, B., Balassa, T., Bernert, Z., Cseki, A., Dani, J., Gallina, JZ., Kocsis-Buruzs, G., Kövári, I., László, O., Pap, I., Petkes, Z., Szenthe, G., Szeniczey, T., Hajdu, T. & Pinhasi, R. 2017. A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis. BioTechniques 62, 283-289.
https://www.future-science.com/doi/10.2144/000114558?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub%3Dwww.ncbi.nlm.nih.gov&

Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., Fu, Q., Harney, E., Lipson, M., Mallick, S., Novak, M., Rohland, N., Stewardson, K., Abdullah, S., Cox, M. P., Friedlaender, F. R., Friedlaender, J. S., Kivisild, T., Koki, G., Kusuma, P., Merriwether, A., Ricaut, F. X., Wee, J. T. S., Patterson, N., Krause, J., Pinhasi, R. & Reich, D. 2017. Genomic insights into the peopling of the Southwest Pacific. Nature 538, 510-513.
https://www.nature.com/articles/nature19844

Skoglund, P., Thompson, J. C., Prendergast, M. E., Mittnik, A., Sirak, K., Hajdinjak, M., Salie, T., Rohland, N., Mallick, S., Peltzer, A., Heinze, A., Olalde, I., Ferry, M., Harney, E., Michel, M., Stewardson, K., Cerezo-Roman, J. I., Chiumia, C., Crowther, A., Gormani-Chindebvu, E., Gidna, A. O., Grillo, K. M., Helenius, I. T., Hellenthal, G., Helm, R., Horton, M., Lopez, S., Mabulla, A. Z. P., Parkington, J., Shipton, C., Thomas, M. G., Tibesasa, R., Weling, M., Hayes, V. M., Kennett, D. J., Ramesar, R., Meyer, M., Paabo, S., Petterson, N., Morris, A. G., Bolvin, N., Pinhasi, R., Krause, J. & Reich, D. 2017. Reconstructing Prehistoric African Population Structure. Cell. 171, 59-71.
https://www.cell.com/cell/fulltext/S0092-8674(17)31008-5

Beckers, A., Fernandes, D., Fina, F., Novak, M., Abati, A., Rostomyan, L., Thiry, A., Ouafik, LH., Pasture, B., Pinhasi, R. & Daly, A. F. 2017. Paleogenetic study of ancient DNA suggestive of X-linked acrogigantism. Endocrine-Related Cancer. 24, 17-20.
https://erc.bioscientifica.com/view/journals/erc/24/2/L17.xml

González-Fortes, G. G., Jones, E. R., Lightfoot, E., Bonsall, C., Lazar, C., Grandal-d’Anglade, A., Garralda, M. D., Drak, L., Siska, V., Simalcsik, A., Boroneant, A., Romaní, J. R. V., Rodríguez, M. V., Arias, P., Pinhasi, R., Manica, A. & Hofreiter, M. 2017. Paleogenomic Evidence for Multi-generational Mixing between Neolithic Farmers and Mesolithic Hunter-Gatherers in Lower Danube Basin. Current Biology 27, 1801–1810.
https://www.sciencedirect.com/science/article/pii/S0960982217305596  

Jones, E. R., Zarina, G., Moiseyev, V., Lightfoot, E., Nigst, P. R., Manica, A., Pinhasi, R. & Bradley, D. G. 2017. The Neolithic transition in the Baltic was not driven by admixture with early European farmers. Current Biology. p. 576-582 27. 
https://www.sciencedirect.com/science/article/pii/S0960982216315421

Siska, V., Jones, E. R., Jeon, S., Bhak, Y., Kim, H-M., Cho, Y. S., Kim, H., Lee, K., Veselovskaya, E., Balueva, T., Gallego-Llorente, M., Hofreitert, M., Bradley, D. G., Eriksson, A., Pinhasi, R., Bhak, J. & Manica, A. 2017. Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. Science Advances 3, e1601877.
https://advances.sciencemag.org/content/3/2/e1601877.full

Margherita, C., Oxilia, G., Barbi, V., Panetta, D., Hublin, J. J., Lordkipanidze, D., Meshveliani, T., Jakeli, N., Matskevich, Z., Bar-Yosef, O., Belfer-Cohen, A., Pinhasi, R. & Benazzi, S. 2017. Morphological description and morphometric analyses of the Upper Palaeolithic human remains from Dzudzuana and Satsurblia caves, western Georgia. Journal of Human Evolution 113, 83-90.
https://www.sciencedirect.com/science/article/abs/pii/S0047248416302391?via%3Dihub

Macintosh, A. A., Pinhasi, R. & Stock, J. T. 2017. Prehistoric women’s manual labor exceeded that of athletes through the first 5500 years of farming in Central Europe. Science Advances. 3, 1-12.
https://advances.sciencemag.org/content/3/11/eaao3893  

2016

Gallego-Llorente, M., Connell, S., Jones, E. R., Merrett, D. C., Jeon, Y., Eriksson, A., Siska, V., Gamba, C., Meiklejohn, C., Beyer, R., Jeon, S., Cho, Y. S., Hofreiter, M., Bhak, J., Manica, A. & Pinhasi, R. 2016. The genetics of an early Neolithic pastoralist from the Zagros, Iran. Scientific Reports. 6, 31326.
https://www.nature.com/articles/srep31326

Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S.,  Clark, G.R., Reepmeyer, C., Petchey, F.,  Fernandes, D., Fu, Q., Harney, E., Lipson, M., Mallick, S., Novak, M., Rohland, N., Stewardson, K., Abdullah, S., Cox, M.P., Friedlaender, F.R., Friedlaender, J.S., Kivisild, T., Koki, G., Kusuma, P., Merriwether, D.A., Ricaut, F.-X., Wee, J.T.S., Patterson, N., Krause, J., Pinhasi, R., Reich, D. 2016. Genomic insights into the peopling of the Southwest Pacific. Nature 538:510-513. https://www.nature.com/articles/nature19844

Lazaridis, I., Nadel, D., Rollefson, G., Merrett, D. C., Rohland, N., Mallick, S., Fernandes, D., Novak, M., Gamarra, B., Sirak, K., Connell, S., Stewardson, K., Harney, E., Fu, Q., Gonzales-Fortes, G., Jones, E. R., Roodenberg, S. A., Lengyel, G., Bocquentin, F., Gasparian, B., Monge, J. M., Gregg, M., Eshed, V., Mizrahi, A-S., Meiklejohn, C., Gerritsen, F., Bejenaru, L., Blüher, M., Campbell, A., Cavalleri, G., Comas, D., Froguel, P., Gilbert, E., Kerr, S. M., Kovacs, P., Krause, J., McGettigan, D., Merrigan, M., Merriwether, D. A., O’Reilly, S., Richards, M. B., Semino, O., Shamoon-Pour, M., Stefanescu, G., Stumvoll, M., Tönjes, A., Torroni, A., Wilson, J. F., Yengo, L., Hovhannisyan, N. A., Patterson, N., Pinhasi, R. & Reich, D., 2016. Genomic insights into the origin of farming in the ancient Near East. Nature 536, 419-424.
https://www.nature.com/articles/nature19310

Pleurdeau, D., Moncel, M-H., Pinhasi, R., Higham, T., Agapishvili, T., Bokeria, M., Muskhelishvili, A., Le Bourdonnec, F-X., Nomade, S., Poupeau, G., Bocherens, H., Frouin, M., Genty, D., Pierre, M., Pons-Branchu, E., Lordkipanidze, D. & Tushabramishvili, N., 1 Aug 2016. Bondi Cave and the Middle-Upper Palaeolithic Transition in western Georgia (South Caucasus). Quaternary Science Reviews 146, 77-98.
https://www.sciencedirect.com/science/article/abs/pii/S0277379116302037

Cheronet, O., Finarelli, J. A. & Pinhasi, R., 2016. Morphological change in cranial shape following the transition to agriculture across western Eurasia. Scientific Reports. 6, 33316.
https://www.nature.com/articles/srep33316

Ash, A., Francken, M., Pap, I., Tvrdy, Z., Wahl, J. & Pinhasi, R. 2016. Regional differences in health, diet and weaning patterns amongst the first Neolithic farmers of central Europe. Scientific Reports. 6, 29458.
https://www.nature.com/articles/srep29458

Galland, M., Van Gerven, D. P., Cramon-Taubadel, N. V. & Pinhasi, R., 9 Aug 2016. 11,000 years of craniofacial and mandibular variation in Lower Nubia. Scientific Reports. 6, 31040.
https://www.nature.com/articles/srep31040

O’Sullivan, N. J., Teasdale, M. D., Mattiangeli, V., Maixner, F., Pinhasi, R., Bradley, D. G. & Zink, A. 2016. A whole mitochondria analysis of the Tyrolean Iceman’s leather provides insights into the animal sources of Copper Age clothing. Scientific Reports. 6, 31279.
https://www.nature.com/articles/srep31279

2015

Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E. R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J. L., de Castro, J. M. B., Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M. A. R., Roodenberg, J., Vergès, J. M., Krause, J., Cooper, A., Alt, K. W., Brown, D., Anthony, D. B., Lalueza-Fox, C., Haak, W., Pinhasi, R. & Reich, D. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature 528, 499-503. 
https://www.nature.com/articles/nature16152

Pinhasi, R., Fernandes, D., Sirak, K., Novak, M., Connell, S., Roodenberg, S. A., Gerritsen, F., Moiseyev, V., Gromov, A., Raczky, P., Anders, A., Pietrusewsky, M., Rollefson, G., Jovanovic, M., Trinhhoang, H., Bar-Oz, G., Oxenham, M., Matsumura, H. & Hofreiter, M. 2015. Optimal ancient DNA yields from the inner ear part of the human petrous bone. PLoS ONE. 10, e0129102.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129102 

Jones, E. R., Gonzalez-Fortes, G., Connell, S., Siska, V., Eriksson, A., Martiniano, R., McLaughlin, R. L., Gallego-Llorente, M., Cassidy, L. M., Gamba, C., Meshveliani, T., Bar-Yosef, O., Müller, W., Belfer-Cohen, A., Matskevich, Z., Jakeli, N., Higham, T. F. G., Currat, M., Lordkipanidze, D., Hofreiter, M., Manica, A., Pinhasi, R. & Bradley, D. G., 16 Nov 2015. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nature Communications. 6,  8912.
https://www.nature.com/articles/ncomms9912

Gallego-Llorente, M., Jones, E. R., Eriksson, A., Siska, V., Arthur, K. W., Curtis, M. C., Stock, J. T., Coltorti, M., Pieruccini, P., Stretton, S., Brock, F., Higham, T., Park, Y., Hofreitert, M., Bradley, D. G., Bhak, J., Pinhasi, R. & Manica, A. 2015. Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa. Science 350, 820-822.
https://science.sciencemag.org/content/350/6262/820.long

2014

Gamba, C., Jones, E. R., Teasdale, M. D., McLaughlin, R. L., Gonzales-Fortes, G., Mattiangeli, V., Domboróczki, L., Kövári, I., Pap, I., Anders, A., Whittle, A., Dani, J., Raczky, P., Higham, T., Hofreiter, M., Bradley, D. G. & Pinhasi, R. 2014. Genomic flux and stasis during five millennia of Hungarian prehistory. Nature Communications. 5, 1-9.
https://www.nature.com/articles/ncomms6257

2011

Pinhasi, R., Higham, T.F.G., Golovanova, L.V., Doronichev, V.B. 2011. Revised age of late Neanderthal occupation and the end of the Middle Palaeolithic in the northern Caucasus. Proceedings of the National Academy of Sciences USA 108:8611-8616.

https://www.pnas.org/content/108/21/8611